Irresistible Gluten-Free Pumpkin Muffins with Crunchy Streusel Topping
Welcome to your new favorite fall baking recipe! These gluten-free pumpkin muffins are designed to be perfectly spiced, boasting a delightfully fluffy and moist texture that will win over everyone in your family, whether they eat gluten or not. Crowned with an irresistible, crunchy streusel, these muffins are an absolute dream on a crisp autumn morning or any time you crave a comforting, pumpkin-spiced treat.
I’ve meticulously tested and refined this recipe countless times to achieve the perfect balance of warm spices and that ideal soft, tender crumb. The streusel topping was a late but brilliant addition, elevating these simple muffins to an addictively delicious level, even for my friends who don’t typically opt for gluten-free baked goods. Prepare to be amazed by their bakery-quality taste and texture!

Why You’ll Love These Gluten-Free Pumpkin Muffins
Before you tie on your apron and head to the kitchen, here’s a deeper dive into what makes these gluten-free pumpkin muffins truly special and why they’re destined to become a seasonal staple:
- Unbeatable Texture: Experience the perfect symphony of textures! The light, fluffy, and incredibly moist interior of the muffins is beautifully contrasted by the delightful crunch of the streusel topping. Each bite offers a harmonious blend that’s simply irresistible.
- Authentic Bakery-Style Look & Feel: Say goodbye to flat muffins! Our unique two-temperature baking method is the secret to achieving those coveted, beautifully domed muffin tops that rival your favorite bakery. This technique promotes maximum rise, giving your muffins a professional, enticing appearance.
- Effortless with Simple Ingredients: You won’t find any exotic or hard-to-pronounce ingredients here. This recipe relies on readily available, standard pantry staples. It’s accessible for any home baker, making delicious gluten-free baking a breeze.
- Incredibly Versatile for Dietary Needs: These muffins are remarkably adaptable. Whether you need them dairy-free, prefer them without the streusel, or want to customize them with various mix-ins like chocolate chips or nuts, this recipe provides an excellent base to suit your preferences and dietary requirements.
- A Seasonal Delight: Pumpkin and warm spices evoke the very essence of autumn. These muffins capture that cozy, comforting feeling, making them the perfect treat to celebrate the fall season or to simply brighten any day.
Every element, from the carefully selected spices to the resting period for the batter, has been designed to deliver a superior gluten-free baking experience. Get ready to bake muffins that are so good, no one will guess they’re gluten-free!
Diving Deeper into Key Ingredients & Notes
While the complete list of ingredients and precise measurements can be found in the recipe card below, understanding the role of certain key ingredients will help you achieve the best results for these gluten-free pumpkin muffins. Let’s explore them:
Gluten-Free Flour Blend
I highly recommend using Bob’s Red Mill Gluten-Free 1-to-1 Baking Flour. This blend is formulated to be a direct substitute for traditional wheat flour, making gluten-free baking straightforward. Crucially, it includes xanthan gum, which is essential for providing structure and elasticity in gluten-free baking, mimicking the role of gluten. If using a different brand, ensure it’s a “measure for measure” or “1-to-1” blend and explicitly states it contains xanthan gum. Without it, your muffins might lack structure and crumble.
Cornstarch
The addition of cornstarch is a game-changer for gluten-free muffins. It helps transform the texture from potentially slightly chewy to wonderfully moist and fluffy. Starches contribute to a tender crumb by weakening the protein network (even in gluten-free flours) and increasing moisture retention. Depending on your chosen gluten-free flour blend (some have a higher starch ratio), you might find this less critical, but for optimal fluffiness, I consider it a must-add.
Spices
My preferred spice blend uses a combination of ground cinnamon and pumpkin pie spice, both from Simply Organic. While relying solely on pumpkin pie spice is an option, I find it can sometimes lead to an overly strong ginger and clove flavor. This dual approach allows for a warmer, more balanced, and truly inviting pumpkin spice profile that enhances the natural sweetness of the pumpkin without being overpowering.
Pumpkin Purée
Pay close attention to your can of pumpkin! You need pure pumpkin purée, not pumpkin pie filling. Pumpkin pie filling is pre-sweetened and spiced, which will throw off the carefully balanced flavors and sweetness of this recipe. Always double-check the label to ensure you’re using 100% pure pumpkin for the best results.
Sugar
This recipe utilizes a blend of granulated sugar and dark brown sugar. This combination is essential for both the texture and depth of flavor. Granulated sugar contributes to a lighter texture and crispness, while dark brown sugar adds a richer, molasses-like flavor and significant moisture, resulting in a more tender muffin. For dietary flexibility, you can swap granulated sugar for cane sugar, or use light brown sugar if dark brown sugar isn’t available, though the flavor will be slightly less intense.
Milk & Greek Yogurt
Unlike many pumpkin muffin recipes that solely rely on oil and pumpkin purée for moisture, I incorporate a touch of milk and plain Greek yogurt. This duo is key to maximizing the muffins’ fluffiness while ensuring they remain incredibly moist. The acidity in the Greek yogurt (or sour cream/mayo, which also works as a dairy-free option) reacts with the baking soda, creating air pockets that help the muffins rise beautifully and achieve that coveted light, airy texture.
Butter (for Streusel)
While the muffin batter uses oil, the streusel topping demands cold, unsalted butter. The coldness of the butter is paramount for achieving a perfectly crunchy streusel. When cold butter is cut into the flour mixture, it creates small pockets that steam during baking, leading to a crisp, crumbly texture. If you only have salted butter, simply omit the pinch of salt from the streusel ingredients. For a dairy-free streusel, vegan butter sticks are an excellent alternative.
Pumpkin Seeds (Pepitas)
To enhance both the nutty flavor and the crunch of the streusel topping, raw pumpkin seeds (pepitas) are a fantastic addition. They toast beautifully in the oven, adding another layer of texture and taste. If you don’t have pepitas on hand, chopped pecans make a delicious substitute.

Step-by-Step Guide to Baking Perfect Gluten-Free Pumpkin Muffins
Baking these delicious gluten-free pumpkin muffins is surprisingly straightforward! Gather your essential tools – mixing bowls, a whisk, a silicone spatula, and a muffin tin – and let’s get baking with these simple steps:
1. Prepare the Muffin Batter
Begin by combining all your dry ingredients in a medium bowl: the gluten-free flour blend, cornstarch, salt, baking soda, baking powder, ground cinnamon, and pumpkin pie spice. Whisk these together thoroughly. This crucial step ensures that all the leavening agents and spices are evenly distributed, preventing any pockets of unmixed ingredients and promoting a consistent rise and flavor throughout your muffins. Set this dry mixture aside.
In a separate, large bowl, whisk together the wet ingredients until they are perfectly smooth. This includes the eggs, neutral-flavored oil (like avocado or light olive oil), both granulated and brown sugars, milk, plain Greek yogurt (or sour cream/mayo if dairy-free), vanilla extract, and the star of the show, pure pumpkin purée. Whisk until well combined, ensuring the sugars have dissolved and the mixture is homogenous.


Now, gently add the dry ingredients into the wet mixture. Mix until a smooth batter forms, being careful not to overmix. Overmixing gluten-free flour can still lead to tough muffins, so stop as soon as everything is just combined. Use your silicone spatula to scrape down the sides and bottom of the bowl, ensuring there are no hidden pockets of dry flour that could cause uneven baking or a gritty texture in your final muffins.

The Secret to Smoother Gluten-Free Muffins: Don’t Skip This Step!
This is a crucial tip for superior gluten-free baking: Allow your batter to rest for 20 minutes before portioning it out into your muffin pan and baking. This resting period gives the gluten-free flours time to fully hydrate, absorbing the liquids in the batter. Proper hydration is key to preventing that often stereotypical gritty or dry texture found in many gluten-free baked goods, resulting in a significantly smoother and more tender crumb. While the batter rests, you can efficiently use this time to preheat your oven to the initial higher temperature, line your muffin pan with paper liners, and prepare your delicious streusel topping.
2. Crafting the Crunchy Streusel
In a small bowl, combine your gluten-free flour, granulated sugar, a pinch of salt, and the star of the streusel – cold, cubed unsalted butter. Using your fingertips, gently pinch and work the cold butter into the dry ingredients. Continue until the mixture resembles coarse crumbs. The key here is to keep the butter cold, as this prevents it from melting into the flour too quickly, which is essential for that signature crunchy texture. If at any point the mixture starts to feel warm or greasy, simply pop the bowl into the freezer for 5 minutes to re-chill it. Finally, stir in the pumpkin seeds (pepitas) or chopped pecans, ensuring they are evenly distributed throughout the streusel mix.
3. The Two-Temperature Baking Method
Once your batter has rested for 20 minutes and your oven is preheated, it’s time to assemble. Evenly portion out the muffin batter into your prepared muffin pan. Then, generously top each muffin with equal amounts of the prepared streusel, aiming for about a heaped teaspoon per muffin. Don’t be shy with the topping; it adds so much flavor and texture!
Now for the expert baking technique: Bake the muffins for an initial 7 minutes at a higher temperature of 410°F (210°C). This high heat provides an initial burst of steam and rapid rise, helping to create those beautifully domed tops. Then, and this is important, *without opening the oven door*, reduce the oven temperature to 375°F (190°C) and continue baking for another 16-18 minutes. This two-temperature method is critical for achieving maximum rise and a light, airy crumb, giving you perfectly domed, bakery-style gluten-free pumpkin muffins every time!
You’ll know your muffins are perfectly baked when a wooden toothpick inserted into the center comes out clean or with just a few moist crumbs attached. Avoid overbaking, as this can lead to dry muffins.

Once baked, allow the muffins to cool in the pan for about 10 minutes. This helps them set and prevents them from sticking. After 10 minutes, carefully transfer them to a wire rack to cool completely. Cooling on a wire rack ensures air circulation around the entire muffin, preventing sogginess and maintaining that delightful crunchy streusel.

Gluten-Free Pumpkin Muffin Recipe
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Ingredients
Muffin Batter
- 1¾ cup gluten-free 1-to-1 flour a blend that includes xanthan gum
- ¼ cup cornstarch
- ½ teaspoon salt
- ½ teaspoon baking soda
- ½ teaspoon baking powder
- 1½ teaspoons ground cinnamon
- 1½ teaspoons pumpkin pie spice
- ½ cup oil neutral flavor oil like avocado oil or light olive oil
- ½ cup granulated sugar
- ½ cup brown sugar
- 1½ cups pure pumpkin purée
- 2 large eggs
- 2 tablespoons milk
- 2 tablespoons plain Greek yogurt sour cream or mayo also work
- 1 teaspoon vanilla extract
Streusel Topping
- ¼ cup gluten-free 1-to-1 flour
- ¼ cup granulated sugar
- 3 tablespoons unsalted butter cubed and chilled
- pinch fine sea salt
- 2 tablespoons pepitas
Instructions
Muffin Batter
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In a medium bowl, mix together the gluten-free flour, cornstarch, salt, baking soda, baking powder, cinnamon, and pumpkin pie spice. Set aside.
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In a large bowl, add the oil, granulated sugar, brown sugar, pumpkin purée, eggs, milk, Greek yogurt, vanilla, and whisk until smooth.
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Add the dry ingredients and mix until combined. Take a silicone spatula and run it along the sides and bottom of the bowl to make sure you have no pockets of dry flour. Let the batter rest for 20 minutes.
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While the batter rests, preheat your oven to 410°F (210°C) and line a muffin pan with paper liners.
Streusel
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In a bowl, add the gluten-free flour, granulated sugar, salt, and cold butter. Use your fingertips to pinch and work the butter into the flour and sugar. Add the pepitas and mix.
Baking
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Evenly portion out the muffin batter in the muffin pan, and top them with equal amounts of streusel (about a heaped teaspoon per muffin). Bake the muffins in the preheated oven for 7 minutes, then turn the temperature down to 375°F (190°C) without opening the oven door, and bake for an additional 16-18 minutes. A toothpick inserted into the center should come out clean or with a couple of crumbs on it. Let them cool for 10 minutes in the pan, and then move them onto a wire rack to cool completely.
Nutrition
Storage and Reheating for Lasting Freshness
To enjoy these gluten-free pumpkin muffins at their best for as long as possible, proper storage is key. Here’s how to keep them fresh and delicious:
Storing Your Muffins
Once completely cooled, place your muffins in an airtight container at room temperature. They will maintain their delicious fluffy and moist texture for 2-3 days. While they are still delightful, the streusel topping may gradually soften over time due to moisture from the muffins. If you plan to keep them longer, freezing is the optimal solution.
Freezing for Longer Enjoyment
For extended freshness, freezing is highly recommended. To freeze, individually wrap each cooled muffin tightly in plastic wrap. This prevents freezer burn and helps maintain their moisture. Once wrapped, place the muffins in a freezer-safe bag or an airtight container. They can be kept frozen for up to 2 months. This is perfect for meal prepping a quick breakfast or a grab-and-go snack!
Reheating Tips
When you’re ready to enjoy a frozen muffin, there are a few convenient reheating methods:
- Quick Microwave Method: If you’re in a hurry, you can warm up a single muffin in the microwave. Remove the plastic wrap and heat in 15-second increments until it’s warmed through. Be careful not to overheat, as this can dry out gluten-free baked goods.
- Oven Reheating for Crispy Streusel: For the best texture, especially if you want to restore that lovely crunchy streusel, reheating in the oven is ideal. Preheat your oven to 325°F (160°C). Remove the plastic wrap from the muffin, then wrap it loosely in aluminum foil to prevent it from drying out during reheating. Place it directly on the oven rack and warm for about 10 minutes, or until heated through and the streusel has re-crisped. This method is also great if you’re reheating several muffins at once.
No matter how you choose to store or reheat them, these gluten-free pumpkin muffins are designed to deliver comforting flavors and a satisfying texture, making them a treat you can enjoy anytime.

Frequently Asked Questions About Gluten-Free Pumpkin Muffins
For this specific recipe, it’s crucial to use a gluten-free “measure for measure” or “1-to-1” flour blend that explicitly contains xanthan gum. Swapping the entire amount of flour for a single-source flour like almond flour will significantly alter the muffin’s texture, leading to a much denser and potentially crumbly result. However, you can substitute up to ¼ cup of the gluten-free 1-to-1 flour with an equal amount of super-fine almond flour for a slight textural variation, but do not replace the majority.
Yes, you can substitute melted butter for the oil in the muffin batter. If you choose to do so, be sure to use unsalted butter. If you only have salted butter available, reduce the amount of added salt in the muffin batter by half a teaspoon to avoid an overly salty flavor. Keep in mind that butter solidifies when cooled, unlike oil which remains liquid. This means that if your home or storage area is cool, your muffins might firm up slightly more than oil-based muffins as they sit, though reheating can often restore their softness.
This recipe is inherently nut-free, provided you’re mindful of your ingredient choices. The key is to ensure that your gluten-free flour blend, milk, and any vegan butter substitutes do not contain nuts. Many brands of gluten-free 1-to-1 flour are nut-free, and regular dairy milk is obviously nut-free. If opting for dairy-free milk or vegan butter, double-check the labels carefully to confirm they are free from almonds or other nuts.
I haven’t personally tested an egg-free version of these muffins. The eggs play a vital role in both providing moisture and contributing significantly to the structural integrity of these muffins. For this reason, I wouldn’t recommend substituting them without careful consideration. While you could attempt using commercial egg replacers or flax eggs, I cannot guarantee the same successful fluffy and moist texture or rise. If you do experiment, be prepared for potential variations in the final product.
Absolutely! Preparing the streusel ahead of time is a fantastic time-saving tip. Simply follow the streusel instructions, then transfer the crumbly mixture to an airtight container. You can store it in the freezer for several weeks until you are ready to bake. This makes assembly on baking day even quicker and more convenient.
It’s common for streusel to soften a bit as it sits, especially due to moisture from the muffins. To revive its delightful crunch, I highly recommend briefly reheating your muffins in the oven. Follow the oven reheating instructions provided above (325°F/160°C wrapped in foil for 10 minutes, then remove foil for a few more minutes if extra crispiness is desired) to re-crisp the streusel topping and warm the muffin through.
Certainly! These gluten-free pumpkin muffins are wonderfully adaptable to various mix-ins. Feel free to stir in ½ to 1 cup of additions such as chocolate chips (dark, milk, or white), chopped nuts (if not needing them nut-free), dried cranberries, or even a swirl of cream cheese (add a dollop of softened cream cheese to the center of each muffin before baking). Add mix-ins after combining the wet and dry ingredients, just before the batter resting period.
More Autumnal Delights: Explore Our Pumpkin Recipes
If you’ve fallen in love with the comforting flavors of these gluten-free pumpkin muffins, you’ll be thrilled to discover more of our favorite pumpkin desserts and snacks perfect for the fall season. Each recipe is designed to bring warmth and deliciousness to your kitchen!
This gluten-free pumpkin bread is one of my absolute go-to snacks to keep stocked in the freezer throughout autumn. It offers a similar delightful spice profile and moist texture to these muffins, but in a convenient loaf cake form, perfect for slicing and sharing.
For a truly decadent treat, these cakey pumpkin bars are incredibly moist and generously topped with a silky, tangy cream cheese frosting. They are a crowd-pleaser and ideal for gatherings.
If you’re hosting a fall get-together and need an impressive dessert, look no further than our dairy-free pumpkin pie. The creamy, rich, and perfectly spiced pumpkin filling is absolutely to die for! For your vegan friends, I also have a fantastic vegan pumpkin pie recipe that receives rave reviews every time.
And for those who adore the classic combination of pumpkin and chocolate, you must try these delightful pumpkin spice blondies or our indulgent pumpkin cheesecake swirl brownies. Both offer a wonderful fusion of sweet pumpkin and rich chocolate, making them irresistible autumnal treats.
We hope these recipes inspire your fall baking adventures and bring joy to your home!