Deliciously Healthy Vegan Pumpkin Morning Glory Muffins: Your Ultimate Make-Ahead Breakfast
Get ready to truly rise and shine with our incredible Healthy Morning Glory Muffins! These naturally vegan bundles of joy are like a vibrant sunrise captured in a muffin cup, bursting with a colorful medley of nourishing ingredients. Imagine the delightful taste of sweet pumpkin, crisp apples, and earthy carrots, all perfectly blended with wholesome whole grains, crunchy nuts, and beneficial seeds. These aren’t just muffins; they’re a celebration of flavor and health, designed to power your day with every moist, deliciously spiced bite. Whether you need a quick, make-ahead breakfast or a satisfying snack on the go, these pumpkin carrot muffins are the wholesome treat you’ve been searching for.

This recipe was originally published on November 1, 2019. It was updated with new photos and expanded information on August 20, 2023.
What is a Morning Glory Muffin? A Wholesome Breakfast Tradition
At its heart, a Morning Glory Muffin is a delightful and nutrient-packed treat, often considered a celebration of all things wholesome and good for you. Originating in the 1970s, these muffins gained popularity for their generous inclusion of healthful ingredients. Typically, they are filled with a vibrant mix of shredded carrots, apples, and a variety of nuts and seeds, all brought together with warm, inviting spices. Our unique recipe elevates this classic by also incorporating canned pumpkin, adding an extra layer of moisture, flavor, and nutritional goodness.
These nourishing treats are designed to be the perfect companion for any morning. Whether you’re rushing out the door and need a quick, energizing bite or you’re taking a quiet moment to savor your coffee, these muffins are ready to brighten your day. Each delicious bite offers a harmonious blend of textures and tastes, making them a truly satisfying and wholesome start.

Essential Ingredients for Your Vegan Pumpkin Morning Glory Muffins
Crafting these delectable no-egg pumpkin muffins is simpler than you might think, requiring a clever combination of pantry staples and an abundance of fresh fruits and vegetables. Here’s a detailed look at what you’ll need to gather to create these moist and flavorful treats:
- All-purpose flour: This foundational ingredient provides the primary structure for our muffins. For those seeking gluten-free options, a reliable gluten-free all-purpose flour mix (ensure it contains xanthan gum for best results) will work beautifully. We’ll include specific GF instructions below. If you’re nostalgic for a denser texture, you can also opt for whole wheat flour, though it will result in a slightly heartier muffin.
- Oat flour: Adding oat flour introduces a wonderful tenderness and a subtle, wholesome flavor to the muffins, while also boosting their fiber content. No oat flour on hand? No problem! Simply blend old-fashioned rolled oats in a high-speed blender or food processor until a fine flour consistency is achieved. Alternatively, you can substitute with an equal amount of additional all-purpose flour.
- Fine salt: Salt plays a crucial role in balancing the sweetness and enhancing all the other flavors. We recommend fine sea salt for its superior taste, but kosher salt is also a good alternative. Iodized salt is generally best avoided in baking as it can sometimes leave a slight bitter aftertaste. If you’re making a substitution, remember to consult a salt conversion chart to ensure accurate measurements.
- Baking soda & baking powder: To achieve that perfect tender crumb and beautiful rise, both leavening agents are essential. Baking soda reacts with acidic ingredients (like pumpkin) to create lift, while baking powder provides an additional boost. If your baking ingredients have been sitting in the pantry for a while, give them a quick freshness test using vinegar for baking soda and hot water for baking powder.
- Pumpkin pie spice: This aromatic blend is the heart of our muffin’s warm, cozy flavor profile. If you don’t have pumpkin pie spice, you can easily create your own by combining 1 teaspoon ground cinnamon, ½ teaspoon ground ginger, ¼ teaspoon ground nutmeg, and ¼ teaspoon ground clove.
- Unsweetened shredded coconut: Coconut adds a lovely texture and a touch of natural sweetness, complementing the other flavors without overwhelming them. While sweetened shredded coconut could be used, we find these muffins are perfectly sweet on their own, making unsweetened the preferred choice to avoid excess sugar.
- Apples: Shredded apples contribute natural sweetness and crucial moisture, ensuring a delightfully soft muffin. Any apple variety you enjoy eating raw will work here. Interestingly, this is also an excellent opportunity to use up any apples that might be a bit mealy for fresh eating – not-so-perfect eating apples often make fantastic baking apples, especially when shredded!
- Carrots: Freshly shredded carrots add a beautiful color, a touch of sweetness, and additional moisture. Feel free to use orange, yellow, or even purple carrots for a unique visual appeal. For a slight variation in flavor and texture, parsnips can also be a wonderful substitute.
- Pecans: These provide a delightful crunch and rich, buttery flavor. For optimal distribution and texture within the muffins, it’s best to use chopped pecans rather than whole halves. Save those fancy pecan halves for garnishing desserts like our gluten-free German Chocolate Cake!
- Ground flaxseed + water: This humble duo is our secret to creating a perfect vegan egg substitute. When mixed together and allowed to sit for 5-10 minutes, the flaxseed absorbs the water and forms a gelatinous, egg-like binder that helps hold our muffins together and adds healthy omega-3s.
- Light brown sugar: Brown sugar not only provides sweetness but also contributes to the muffins’ moistness and depth of flavor with its subtle molasses notes. Dark brown sugar can be used for a more pronounced molasses taste. For those looking for less-refined options, muscovado sugar or grated jaggery can also be excellent swaps.
- Canned pumpkin: This star ingredient is key to both the flavor and incredibly moist texture of these muffins. Pumpkin acts as an excellent binder, replacing eggs and adding a wonderful earthy sweetness. It’s also a fantastic way to utilize any leftover pumpkin puree you might have from making our gluten-free pumpkin bread or pumpkin spice blondies, making these muffins a perfect year-round treat.
- Oil: Any neutral-flavored oil, such as avocado oil, works well to keep the muffins tender and moist without imparting unwanted flavors. For an intriguing layer of complexity, you could even experiment with a fruity Spanish olive oil.
- Vanilla extract: Vanilla extract is essential for enhancing all the other flavors and adding a hint of warmth and sweetness. You can confidently use an equal amount of vanilla paste or vanilla powder for a similar effect.

How To Bake These Healthy Morning Glory Muffins: A Simple Guide
Making these homemade morning glory muffins is a straightforward and enjoyable process that comes together in just a few simple steps. You’ll love how easily these vibrant and flavorful treats transform from individual ingredients into perfectly baked muffins.
Step 1: Prep Your Baking Station. Begin by preheating your oven to 356°F (180°C). This ensures your oven is at the ideal temperature when the muffins are ready to bake, leading to an even rise and perfectly cooked interior. Next, line a 12-cup muffin pan with paper liners. This simple step makes for easy removal and cleanup, allowing you to enjoy your delicious muffins without any fuss.
Step 2: Create Your Flax Eggs. In a large mixing bowl, combine the ground flaxseed and water. Give it a good stir and then set it aside. This mixture will gradually thicken into a gel-like consistency, typically within about 10 minutes. This “flax egg” is a fantastic plant-based binder, perfectly replicating the function of a traditional egg in vegan baking.

Step 3: Combine Dry Ingredients. In a separate, medium-sized bowl, whisk together all your dry ingredients: the all-purpose flour, oat flour, fine salt, baking soda, baking powder, pumpkin pie spice, and unsweetened shredded coconut. This step ensures that all the leavening agents and spices are evenly distributed throughout the batter, preventing pockets of unmixed ingredients. Set this bowl aside while you prepare the wet components.


Step 4: Prepare Wet Ingredients & Add Produce. Return to the bowl containing your thickened flaxseed mixture. To this, add the light brown sugar, canned pumpkin, oil, and vanilla extract. Stir these ingredients together until the mixture is smooth and well combined. This forms the flavorful, moist base of your muffins. Next, gently fold in the shredded apples and carrots using a spatula. Be careful not to overmix; just incorporate them until evenly distributed.


Step 5: Gently Combine Wet and Dry. Now, carefully add the flour mixture (from Step 3) to the pumpkin and flaxseed mixture (from Step 4). Using your spatula, stir until the ingredients are just combined. Overmixing can lead to tough muffins, so stop as soon as you see no dry streaks of flour. Finally, fold in the chopped pecans. This step adds a delightful crunch and nutty flavor throughout the muffins.
***NOTE: Gluten-Free Dairy-Free Pumpkin Muffins Tip: If you are making these into gluten-free dairy-free pumpkin muffins, it’s crucial to let the batter rest for 30 minutes after this step. This resting period allows the gluten-free flours to properly hydrate, resulting in a better texture and less crumbly muffin.


Step 6: Fill and Bake. With your batter ready, evenly dish it out among the 12 wells of your prepared muffin pan. Aim for consistent amounts in each cup to ensure even baking. Bake in your preheated oven for approximately 25 minutes. The muffins should be golden brown and spring back when lightly touched. A toothpick inserted into the center should come out clean.
Step 7: Cool Properly. Once baked, resist the urge to immediately remove them! Let the muffins cool in the pan for about 5 minutes. This allows them to set properly and prevents them from sticking or breaking apart. After 5 minutes, transfer them onto a wire rack to cool completely. Cooling on a wire rack ensures air circulation, preventing soggy bottoms and maintaining their perfect texture.


Delightful Ways to Enjoy Your Healthy Morning Glory Muffins
These versatile vegan pumpkin muffins are perfect for a variety of occasions. Here are some of our favorite ways to enjoy them:
- The Ultimate Breakfast on the Go: For those busy mornings when you barely have time to think, these healthy vegan pumpkin muffins are your ultimate solution. Prepare a batch on a relaxing Sunday, and you’ll have wholesome, delicious grab-and-go breakfasts sorted for the entire week. They’re a fantastic way to ensure you start your day with nourishing fuel, even when time is tight.
- Perfect for Packed Lunches: Whether you’re heading to the office or packing lunches for your little ones at school or camp, these moist and flavorful muffins make a wonderful addition to any lunchbox. They offer a touch of homemade goodness that’s both satisfying and nutritious, making lunch a little more exciting.
- Be the “Cool Snack Mom” (or Dad!): When it’s your turn to bring snacks to the next sporting event or school function, ditch the mundane carrot sticks! These pumpkin-laced vegan morning glory muffins are sweet enough to earn a definitive kid stamp of approval, while secretly delivering a generous boost of nutrients. Get ready to collect those “cool mom/dad” points!
- Elevate Your Breakfast Buffet: Hosting a brunch or breakfast gathering? Pair these delightful muffins with other healthy, self-serve options to create an inviting spread. Think creamy coconut yogurt, crunchy homemade gluten-free granola, and a colorful array of fresh-cut seasonal fruits. And, of course, don’t forget the essential beverages: steaming coffee, a selection of teas, and refreshing juices.

Pro Tips for Perfect Morning Glory Muffins Every Time
Achieving bakery-quality vegan pumpkin morning glory muffins at home is easier than you think with these expert tips:
- Embrace the Power of a Food Processor: For quick and effortless vegetable preparation, a food processor fitted with the large shredding blade is an absolute game-changer. It will make short work of shredding your carrots and apples, saving you precious time. However, if you don’t have one, a good old-fashioned box grater works perfectly well – consider it a bonus arm workout!
- Prevent Over-Filling Your Muffin Liners: To ensure all your muffins bake evenly and achieve a consistent size and shape, it’s crucial not to overfill the liners. We find that using an ice cream scoop (a standard 3-tablespoon size works perfectly) is incredibly helpful for portioning out the batter. This method ensures each of the 12 wells in your muffin tin receives an equal amount, leading to uniformly beautiful muffins.
- Add a Professional Bakery Touch: Want your homemade muffins to look as good as they taste? Reserve a small handful of chopped pecans to sprinkle over the tops of the muffins just before baking. This simple garnish adds visual appeal and a lovely extra crunch. For an even more professional look, you can also sprinkle a little granulated sugar, turbinado sugar, or coarse sanding sugar for a glistening finish.
- Master the Art of Cooling for Optimal Texture: Patience is key when it comes to cooling your muffins! Always allow your homemade morning glory muffins to cool completely to room temperature before storing them in an airtight container. If you pack them away while they are still warm, condensation will accumulate inside the container, causing moisture to rain down on the muffins. This inevitably leads to a soggy, sticky texture that detracts from their deliciousness. A wire rack ensures proper air circulation for a perfect cool-down.
Frequently Asked Questions About Morning Glory Muffins
The term “muffin” can be a bit misleading, as some commercial varieties are essentially glorified cupcakes, laden with sugar and refined flours. However, there’s a distinct category of what we consider wholesome muffins. These are the ones that prioritize nutrient-dense ingredients like whole grains, real fruits and vegetables, and beneficial nuts and seeds. Our Healthy Morning Glory Muffins, packed with pumpkin, carrots, apples, and flaxseed, absolutely fall into the wholesome category. While I’m not a nutrition professional, by a common-sense assessment, these muffins offer a fantastic balance of fiber, vitamins, and complex carbohydrates, making them an excellent choice for a nourishing breakfast.
Nutritional content can vary wildly between different Morning Glory muffin recipes. However, for this specific nut, seed, fruit, and veggie-packed vegan pumpkin muffin recipe, you can expect each muffin to contain approximately 295 calories and around 17 grams of sugar. It’s important to note that a significant portion of this sugar comes naturally from the fruits and vegetables themselves, with only ¾ cup of brown sugar added to the entire batch. This makes them a more naturally sweetened option compared to many store-bought alternatives.
Proper storage is key to maintaining the freshness and deliciousness of your vegan pumpkin morning glory muffins. They will stay fresh for up to 3 days when stored in an airtight container at room temperature. If you need them to last longer, transfer them to the refrigerator, where they’ll keep well for 5 to 6 days. For extended storage, these muffins freeze beautifully for up to a couple of months! To freeze, wrap each individual muffin carefully, ideally in something airtight like a zip-top bag with all the air removed to prevent freezer burn. When you’re ready to enjoy them after freezing, simply let them defrost at room temperature for about 20 minutes, then warm them gently in a toaster oven or with a quick zap in the microwave for that freshly baked taste.
Absolutely! Adapting these tasty treats to be celiac-friendly is quite simple. When substituting, use your favorite gluten-free 1-to-1 baking flour for the all-purpose flour. For reference, 1 cup of Bob’s Red Mill 1-to-1 baking flour typically weighs around 148g. Additionally, ensure that your oat flour is certified gluten-free to avoid any cross-contamination. A crucial step for successful gluten-free baking is to give your muffin batter a brief 30-minute rest after mixing, before baking. This allows the gluten-free flours to adequately rehydrate, leading to a much better texture and preventing a dry, crumbly result.
More Delicious Muffin Recipes to Explore
If you’ve fallen in love with these Morning Glory Muffins, you’ll be thrilled to discover more of our favorite muffin creations:
- These gluten-free pumpkin muffins are incredibly fluffy, moist, and bursting with autumn flavor.
- Our cranberry orange muffins are the perfect seasonal bake, especially when you have leftover cranberries from holiday feasts.
- For a classic, crowd-pleasing treat, try our bakery-style blueberry muffins, known for their irresistible fluffy texture and iconic domed tops.
- If you need a gluten-free version of a classic, our gluten-free blueberry muffins are a top-tier recipe, offering a wonderfully fluffy texture and buttery flavor that will fool even the most discerning palate.
- Going bananas? Try these incredibly moist gluten-free banana muffins, or for a savory-sweet option, our equally moist gluten-free zucchini muffins.
Not in the mood for muffins today, but still craving that warm, comforting pumpkin flavor? Don’t miss our indulgent ultimate dairy-free pumpkin pie recipe or our flavorful gluten-free pumpkin bread instead!

Healthy Morning Glory Muffins
Breakfast, Snack
American
10 minutes
25 minutes
35 minutes
12
muffins
295
kcal
Ai Willis
Print
Pin
Rate
Ingredients
-
1
cup
all-purpose flour
-
1
cup
oat flour -
½
teaspoon
fine salt
-
1
teaspoon
baking soda
-
1
teaspoon
baking powder
-
2
teaspoons
pumpkin pie spice
(see Notes) -
½
cup
unsweetened shredded coconut -
1½
cup
shredded apples -
1½
cup
shredded carrots -
¾
cup
chopped pecans -
2
tablespoons
ground flaxseed -
5
tablespoons
water -
¾
cup
light brown sugar -
7.5
oz
pumpkin -
½
cup
oil
-
1
teaspoon
vanilla extract
Instructions
-
Preheat the oven to 356°F (180°C) and line a muffin pan with paper liners.
-
In a large bowl, mix together the flaxseed and water and set aside until it thickens into a gel, about 10 minutes.
-
In a separate bowl combine the all-purpose flour, oat flour, salt, baking soda, baking powder, pumpkin pie spice, and unsweetened shredded coconut. Set aside.
-
Into the bowl with the flaxseed mixture, add the sugar, pumpkin, oil, and vanilla extract, and stir until smooth. Fold in the apples and carrots using a spatula.
-
Add the flour mixture to the pumpkin mixture and stir until just combined. Fold in the pecans using a spatula.
-
Evenly dish out the batter in the muffin pan and bake them in the preheated oven for 25 minutes. Let them cool in the pan for 5 minutes before taking them out onto a wire rack to cool completely.
Notes
No pumpkin pie spice? Just use 1 teaspoon ground cinnamon, ½ teaspoon ground ginger, ¼ teaspoon ground nutmeg, and ¼ teaspoon ground clove.
Gluten-free:
Use a gluten-free 1-to-1 flour for the all-purpose flour (1 cup of Bob’s Red Mill 1-to-1 baking flour is 148g). Make sure oat flour is certified gluten-free. Remember to let the batter rest for 30 minutes before baking for best results.
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Nutrition
Serving:
1
muffin
|
Calories:
295
kcal
|
Carbohydrates:
32
g
|
Protein:
4
g
|
Fat:
18
g
|
Saturated Fat:
4
g
|
Polyunsaturated Fat:
3
g
|
Monounsaturated Fat:
10
g
|
Sodium:
248
mg
|
Potassium:
240
mg
|
Fiber:
3
g
|
Sugar:
17
g
|
Vitamin A:
3760
IU
|
Vitamin C:
3
mg
|
Calcium:
59
mg
|
Iron:
2
mg
We hope you love these healthy vegan pumpkin morning glory muffins as much as we do! They truly are a delightful and nourishing treat that brings a burst of flavor and goodness to any day. Happy baking!